Subtree-grafting python script

  • Cale O. Seymour (Creator)
  • Marike Palmer (Creator)
  • Eric D. Becraft (Creator)
  • Ramunas Stepanauskas (Creator)
  • Ariel D. Friel (Creator)
  • Frederik Schulz (Creator)
  • Tanja Woyke (Creator)
  • Emiley A. Eloe-Fadrosh (Creator)
  • Dengxun Lai (Creator)
  • Jian Yu Jiao (Creator)
  • Zheng Shuang Hua (Creator)
  • Zheng Han Lian (Creator)
  • Maria Chuvochina (Creator)
  • Brianna K. Finley (Creator)
  • Benjamin J. Koch (Creator)
  • Bruce A. Hungate (Creator)
  • Brian P. Hedlund (Creator)

Dataset

Description

1) Extracts a subtree from the GTDB overall tree based on taxonomy. In this case, Omnitrophota and Ratteibacteria.2) Build a fake pplacer refpkg based on the original info in the GTDB refpkg.3) Run pplacer on the subtree using the model info for the lar...
Date made available2022
Publisherfigshare

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