Applied Mathematics - GIDP - Scholarly Works

2023

Atomistic description of the relationship between protein dynamics and catalysis with transition path sampling

Antoniou, D., Zoi, I. & Schwartz, S. D., Jan 2023, New Experimental Probes for Enzyme Specificity and Mechanism. Richard, J. P. & Moran, G. R. (eds.). Academic Press Inc., p. 319-340 22 p. (Methods in Enzymology; vol. 685).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Biophysics of Membrane Stiffening by Cholesterol and Phosphatidylinositol 4,5-bisphosphate (PIP2)

Doole, F. T., Gupta, S., Kumarage, T., Ashkar, R. & Brown, M. F., 2023, Advances in Experimental Medicine and Biology. Springer, p. 61-85 25 p. (Advances in Experimental Medicine and Biology; vol. 1422).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

2022

Cholesterol stiffening of lipid membranes and drug interactions: Insights from neutron spin echo and deuterium NMR spectroscopy

Gupta, S., Doole, F. T., Kumarage, T., Doktorova, M., Khelashvili, G., Ashkar, R. & Brown, M. F., Jan 1 2022, Cholesterol: From Chemistry and Biophysics to the Clinic. Elsevier, p. 771-796 26 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Fundamental Principles and Techniques of Landscape Evolution Modeling

Pelletier, J. D., Jan 1 2022, Treatise on Geomorphology. Elsevier, p. 27-42 16 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Imaging of the Lymphatic System with Relevance to Cancer and Cancer Metastasis

Witte, R. S. & Bernas, M., Jan 1 2022, Cancer Metastasis Through the Lymphovascular System. Springer International Publishing, p. 249-259 11 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Loops in SU(2) and Factorization, II

Basor, E. & Pickrell, D., 2022, Operator Theory: Advances and Applications. Springer Science and Business Media Deutschland GmbH, p. 117-149 33 p. (Operator Theory: Advances and Applications; vol. 289).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Multi-Level Selection of the Individual Organism

Michod, R. E., Jan 1 2022, The Evolution of Multicellularity. CRC Press, p. 25-52 28 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

Simulation of blood flow and oxygen transport in vascular networks

Secomb, T. W., Jan 1 2022, The Vasculome: From Many, One. Elsevier, p. 173-179 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

2021

Evaluation and Image Quality in Radiation-Based Medical Imaging

Kupinski, M. A., Jan 1 2021, Handbook of Particle Detection and Imaging: Second Edition. Springer International Publishing, p. 1451-1464 14 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Hemodynamics and Vascular Remodeling

Secomb, T. W., 2021, Cardiac and Vascular Biology. Springer Science and Business Media Deutschland GmbH, p. 1-20 20 p. (Cardiac and Vascular Biology; vol. 8).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Ultrafast Nonequilibrium Carrier Dynamics in Semiconductor Laser Mode-Locking

Kilen, I., Hader, J., Koch, S. W. & Moloney, J. V., Jan 1 2021, Vertical External Cavity Surface Emitting Lasers: VECSEL Technology and Applications. Wiley, p. 267-303 37 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2019

Cholesterol effects on the physical properties of lipid membranes viewed by solid-state NMR spectroscopy

Molugu, T. R. & Brown, M. F., 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 99-133 35 p. (Advances in Experimental Medicine and Biology; vol. 1115).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

10 Scopus citations

Collective dynamics in lipid membranes: The continuum is that which is divisible into indivisibles that are infinitely divisible (Aristotle, Physics)

Brown, M. F., Jul 22 2019, Characterization of Biological Membranes: Structure and Dynamics. de Gruyter, p. 231-267 37 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

Evolutionary quantitative genetics

Walsh, B. & Morrissey, M. B., Jul 29 2019, Handbook of Statistical Genomics. Wiley, Vol. 1. p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Scopus citations

On multiplicative properties of determinants

Friedlander, L., 2019, Contemporary Mathematics. American Mathematical Society, p. 123-128 6 p. (Contemporary Mathematics; vol. 734).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

2018

Correlations in disordered quantum harmonic oscillator systems: The effects of excitations and quantum quenches

Abdul-Rahman, H., Sims, R. & Stolz, G., 2018, Contemporary Mathematics. American Mathematical Society, p. 31-47 17 p. (Contemporary Mathematics; vol. 717).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

Implementation of Observer Models

Kupinski, M. A., Jan 1 2018, The Handbook of Medical Image Perception and Techniques: Second Edition. Cambridge University Press, p. 289-299 11 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Lieb-robinson bounds, the spectral flow, and stability of the spectral gap for lattice fermion systems

Nachtergaele, B., Sims, R. & Young, A., 2018, Contemporary Mathematics. American Mathematical Society, p. 93-115 23 p. (Contemporary Mathematics; vol. 717).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

30 Scopus citations

Optically pumped semiconductor lasers

Moloney, J. V. & Laurain, A., Jan 1 2018, Encyclopedia of Modern Optics. Elsevier, Vol. 1-5. p. 280-289 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Solid-state ² H NMR studies of water- mediated lipid membrane deformation

Molugu, T. R., Xu, X., Lee, S., Mallikarjunaiah, K. J. & Brown, M. F., Jun 13 2018, Modern Magnetic Resonance. Springer International Publishing, p. 1225-1250 26 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Solid-state deuterium NMR spectroscopy of membranes

Molugu, T. R., Xu, X., Leftin, A., Lope-Piedrafita, S., Martinez, G. V., Petrache, H. I. & Brown, M. F., Jun 13 2018, Modern Magnetic Resonance. Springer International Publishing, p. 581-603 23 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Solid-state deuterium NMR spectroscopy of rhodopsin

Perera, S. M. D. C., Xu, X., Molugu, T. R., Struts, A. V. & Brown, M. F., Jun 13 2018, Modern Magnetic Resonance. Springer International Publishing, p. 1251-1270 20 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Study quiescence heterogeneity by coupling single-cell measurements and computer modeling

Kwon, J. S., Wang, X. & Yao, G., 2018, Methods in Molecular Biology. Humana Press Inc., p. 287-299 13 p. (Methods in Molecular Biology; vol. 1686).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

The dynamics and analysis of patterns

Newell, A. C., Jan 1 2018, Pattern Formation in the Physical and Biological Sciences. CRC Press, p. 201-268 68 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

2017

Acoustic Analogues

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 319-360 42 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Coherence

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 163-259 97 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Introduction to Spring Systems

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 1-36 36 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

On reconstruction formulas and algorithms for the thermoacoustic tomography

Agranovsky, M., Kuchment, P. & Kunyansky, L., Jan 1 2017, Photoacoustic Imaging and Spectroscopy. CRC Press, p. 89-101 13 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

27 Scopus citations

Phase and Topology

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 37-80 44 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Topology and Duality of Sound and Elastic Waves

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 81-161 81 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Wave Mixing

Deymier, P. & Runge, K., 2017, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 261-318 58 p. (Springer Series in Solid-State Sciences; vol. 188).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2016

−1 Programmed Ribosomal Frameshifting as a Force-Dependent Process

Visscher, K., 2016, Nanotechnology Tools for the Study of RNA. Elsevier B.V., p. 45-72 28 p. (Progress in Molecular Biology and Translational Science; vol. 139).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

2 Scopus citations

Consistent embedding frameworks for predictive multi-theory multiscale simulations

Muralidharan, K., Runge, K. A. & Deymier, P. A., 2016, Springer Series in Materials Science. Springer-Verlag, p. 249-297 49 p. (Springer Series in Materials Science; vol. 226).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Linear and Nonlinear Metamaterials and Transformation Optics

Litchinitser, N. M., Gabitov, I. R., Maimistov, A. I. & Shalaev, V. M., Jan 1 2016, Tutorials in Metamaterials. CRC Press, p. 1-27 27 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Methods for high-dimensional and computationally intensive models

Balesdent, M., Brevaul, L., Lacaze, S., Missoum, S. & Morio, J., 2016, Estimation of Rare Event Probabilities in Complex Aerospace and Other Systems: A Practical Approach. Elsevier Inc., p. 109-136 28 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

11 Scopus citations

Numerical Simulation of Ultra-Short Laser Pulses

Panagiotopoulos, P., Whalen, P. T., Kolesik, M. & Moloney, J. V., Jan 1 2016, CRM Series in Mathematical Physics. Springer International Publishing, p. 185-213 29 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Path integral molecular dynamics methods

Deymier, P. A., Runge, K., Oh, K. D. & Jabbour, G. E., 2016, Springer Series in Materials Science. Springer-Verlag, p. 13-106 94 p. (Springer Series in Materials Science; vol. 226).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

Path Sampling Methods for Enzymatic Quantum Particle Transfer Reactions

Dzierlenga, M. W., Varga, M. J. & Schwartz, S. D., 2016, Computational Approaches for Studying Enzyme Mechanism Part B. Academic Press Inc., p. 21-43 23 p. (Methods in Enzymology; vol. 578).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Scopus citations

Probabilistic risk assessment of damage to groundwater systems

Winter, C. L. & Tartakovsky, D. M., Nov 25 2016, The Handbook of Groundwater Engineering: Third Edition. CRC Press, p. 641-655 15 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Sloppiness and the Geometry of Parameter Space

Mannakee, B. K., Ragsdale, A. P., Transtrum, M. K. & Gutenkunst, R. N., 2016, Studies in Mechanobiology, Tissue Engineering and Biomaterials. Springer, p. 271-299 29 p. (Studies in Mechanobiology, Tissue Engineering and Biomaterials; vol. 17).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

27 Scopus citations

2015

Investigation of rhodopsin dynamics in its signaling state by solid-state deuterium NMR spectroscopy

Struts, A. V., Chawla, U., Perera, S. M. D. C. & Brown, M. F., Feb 19 2015, Rhodopsin: Methods and Protocols. Springer New York, p. 133-158 26 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

3 Scopus citations

Mathematics of photoacoustic and thermoacoustic tomography

Kuchment, P. & Kunyansky, L., Jan 1 2015, Handbook of Mathematical Methods in Imaging: Volume 1, Second Edition. Springer New York, p. 1117-1167 51 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

27 Scopus citations

Megasonic Cleaning for Particle Removal

Keswani, M. K., Balachandran, R. & Deymier, P. A., Feb 6 2015, Particle Adhesion and Removal. Wiley, p. 243-279 37 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

Simulating foreland basin response to mountain belt kinematics and climate change in the Eastern Cordillera and Subandes: An analysis of the Chaco foreland basin in southern Bolivia

Engelder, T. M. & Pelletier, J. D., 2015, Geodynamics of a Cordilleran Orogenic System: The Central Andes of Argentina and Northern Chile. Ducea, M. N., DeCelles, P. G., Kapp, P. A. & Carrapa, B. (eds.). Geological Society of America, p. 337-357 21 p. (Memoir of the Geological Society of America; vol. 212).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

2014

Compression of DNA microarray images

Hernández-Cabronero, M., Marcellin, M. W. & Serra-Sagristà, J., Jan 1 2014, Microarray Image and Data Analysis: Theory and Practice. CRC Press, p. 195-225 31 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Cranial compression ischemic encephalopathy: Fetal neurological injury related to the mechanical forces of labor and delivery

Schifrin, B. S., Deymier, P. & Cohen, W. R., Oct 1 2014, Stress and Developmental Programming of Health and Disease: Beyond Phenomenology. Nova Science Publishers, Inc., p. 651-688 38 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

19 Scopus citations

Effects of tsunami wave erosion on natural landscapes: Examples from the 2011 Tohoku-oki tsunami

Komatsu, G., Goto, K., Baker, V. R., Oguchi, T., Hayakawa, Y. S., Saito, H., Pelletier, J. D., McGuire, L. & Iijima, Y., 2014, Advances in Natural and Technological Hazards Research. Springer Netherlands, p. 243-253 11 p. (Advances in Natural and Technological Hazards Research; vol. 35).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

10 Scopus citations

2013

2D–3D Phononic Crystals

Sukhovich, A., Page, J. H., Vasseur, J. O., Robillard, J. F., Swinteck, N. & Deymier, P. A., 2013, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 95-157 63 p. (Springer Series in Solid-State Sciences; vol. 173).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

5 Scopus citations

Discrete One-Dimensional Phononic and Resonant Crystals

Deymier, P. A. & Dobrzynski, L., 2013, Springer Series in Solid-State Sciences. Springer Science and Business Media Deutschland GmbH, p. 13-44 32 p. (Springer Series in Solid-State Sciences; vol. 173).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

DNA repair as the primary adaptive function of sex in bacteria and eukaryotes

Bernstein, H., Bernstein, C. & Michod, R. E., Jan 1 2013, Medical and Biological Frontiers Research Compendium. Nova Science Publishers, Inc., p. 109-144 36 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Applied Mathematics - GIDP

Scholarly Works

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