Engineering, Steve Sanghi College of

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• Leptospira in river and soil in a highly endemic area of Ecuador

  Jiménez, D. J. (Contributor), Mihaljevic, J. R. (Contributor), Izurieta, R. (Contributor), Miller, E. (Contributor), Trueba, G. (Contributor), Weddell, C. (Contributor), Nieto, N. (Contributor), Aleman, J. (Contributor), Luna, L. (Contributor), Chiriboga, J. (Contributor), Barragan, V. (Contributor), Pearson, T. (Contributor), Marks, J. (Contributor), Olivas, S. (Contributor) & Caporaso, J. G. (Contributor), figshare Academic Research System, Jan 1 2021

  DOI: 10.6084/m9.figshare.c.5261254.v1, https://doi.org/10.6084%2Fm9.figshare.c.5261254.v1

  Dataset

• Additional file 1: of Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

  Ternus, K. L. (Contributor), Uritskiy, G. (Contributor), Cepeda-Espinoza, V. (Contributor), Rogers, S. M. (Contributor), Hasan, N. A. (Contributor), Brown, A. (Contributor), Schliebs, N. O. (Contributor), Nasko, D. J. (Contributor), Ondov, B. D. (Contributor), Zhang, S. X. (Contributor), Fedarko, M. (Contributor), Olson, N. D. (Contributor), Javkar, K. (Contributor), Conlan, S. (Contributor), Preheim, S. (Contributor), Ratnayake, S. (Contributor), Chopyk, J. (Contributor), Pop, M. (Contributor), Corrada-Bravo, H. (Contributor), Rosovitz, M. J. (Contributor), Forry, S. P. (Contributor), Diruggiero, J. (Contributor), Brubach, B. (Contributor), Bergman, N. H. (Contributor), Kralj, J. (Contributor), Treangen, T. J. (Contributor), Meisel, J. S. (Contributor), Allard, S. M. (Contributor), Luethy, P. M. (Contributor), Milton, D. K. (Contributor), Caporaso, J. G. (Contributor), Shah, N. (Contributor), Bazinet, A. L. (Contributor), Sommer, D. D. (Contributor), Sakowski, E. G. (Contributor) & Ghurye, J. (Contributor), figshare Academic Research System, Nov 5 2018

  DOI: 10.6084/m9.figshare.7300967.v1, https://doi.org/10.6084%2Fm9.figshare.7300967.v1

  Dataset

• Additional file 1: Table S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Geis, E. (Contributor), Fasano, A. (Contributor), Khoruts, A. (Contributor), Sadowsky, M. J. (Contributor), Caporaso, J. G. (Contributor), Lipson, K. S. (Contributor), McDonough-Means, S. (Contributor), Adams, J. B. (Contributor), Chittick, L. (Contributor), Borody, T. (Contributor), Gregory, A. C. (Contributor), Kang, D.-W. (Contributor), Maldonado, J. (Contributor), Krajmalnik-Brown, R. (Contributor), Pollard, E. L. (Contributor), Sullivan, M. B. (Contributor) & Roux, S. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866_d3.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866_d3.v1

  Dataset

• EPOCA Svalbard 2010 mesocosm experiment: bacterial community structure

  Riebesell, U. (Contributor), Gibbons, S. M. (Contributor), Gilbert, J. A. (Contributor), Roy, A.-S. (Contributor), Bittner, L. (Contributor), Mühling, M. (Contributor), Sperling, M. (Contributor), Romac, S. (Contributor), Owens, S. (Contributor), LaRoche, J. (Contributor), Schunck, H. (Contributor) & Caporaso, J. G. (Contributor), PANGAEA, Jun 13 2013

  DOI: 10.1594/pangaea.833325, https://doi.pangaea.de/10.1594/PANGAEA.833325

  Dataset

• Additional file 3: Figure S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Sadowsky, M. J. (Contributor), Borody, T. (Contributor), Caporaso, J. G. (Contributor), Krajmalnik-Brown, R. (Contributor), Geis, E. (Contributor), Khoruts, A. (Contributor), Pollard, E. L. (Contributor), Sullivan, M. B. (Contributor), Kang, D.-W. (Contributor), McDonough-Means, S. (Contributor), Lipson, K. S. (Contributor), Roux, S. (Contributor), Gregory, A. C. (Contributor), Fasano, A. (Contributor), Adams, J. B. (Contributor), Maldonado, J. (Contributor) & Chittick, L. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866_d5.v1

  Dataset

• Additional file 1 of Leptospira in river and soil in a highly endemic area of Ecuador

  Nieto, N. (Contributor), Marks, J. (Contributor), Jiménez, D. J. (Contributor), Caporaso, J. G. (Contributor), Barragan, V. (Contributor), Miller, E. (Contributor), Weddell, C. (Contributor), Mihaljevic, J. R. (Contributor), Olivas, S. (Contributor), Aleman, J. (Contributor), Luna, L. (Contributor), Izurieta, R. (Contributor), Trueba, G. (Contributor), Pearson, T. (Contributor) & Chiriboga, J. (Contributor), figshare Academic Research System, Jan 1 2021

  DOI: 10.6084/m9.figshare.13543912.v1, https://doi.org/10.6084%2Fm9.figshare.13543912.v1

  Dataset

• Supporting data for "Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets"

  González, A. (Contributor), Rideout, J. R. (Contributor), Chase, J. H. (Contributor), Caporaso, G. (Contributor), Ackermann, G. (Contributor), Knight, R. (Contributor) & Bolyen, E. (Contributor), GigaDB, Jan 1 2015

  DOI: 10.5524/100204, https://doi.org/10.5524%2F100204

  Dataset

• Species abundance information improves sequence taxonomy classification accuracy - Qiita data

  Kaehler, B. D. (Contributor), Huttley, G. A. (Contributor), McDonald, D. (Contributor), Knight, R. (Contributor), Gregory Caporaso, C. J. (Contributor) & Bokulich, N. A. (Contributor), Zenodo, Jan 25 2019

  DOI: 10.5281/zenodo.2548899, https://zenodo.org/record/2548899

  Dataset

• Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

  Diruggiero, J. (Contributor), Rosovitz, M. J. (Contributor), Shah, N. (Contributor), Brubach, B. (Contributor), Caporaso, J. G. (Contributor), Corrada-Bravo, H. (Contributor), Forry, S. P. (Contributor), Hasan, N. A. (Contributor), Rogers, S. M. (Contributor), Ternus, K. L. (Contributor), Javkar, K. (Contributor), Conlan, S. (Contributor), Kralj, J. (Contributor), Bergman, N. H. (Contributor), Sakowski, E. G. (Contributor), Milton, D. K. (Contributor), Cepeda-Espinoza, V. (Contributor), Bazinet, A. L. (Contributor), Ratnayake, S. (Contributor), Chopyk, J. (Contributor), Pop, M. (Contributor), Brown, A. (Contributor), Fedarko, M. (Contributor), Ondov, B. D. (Contributor), Zhang, S. X. (Contributor), Sommer, D. D. (Contributor), Nasko, D. J. (Contributor), Schliebs, N. O. (Contributor), Allard, S. M. (Contributor), Uritskiy, G. (Contributor), Preheim, S. (Contributor), Meisel, J. S. (Contributor), Ghurye, J. (Contributor), Treangen, T. J. (Contributor), Luethy, P. M. (Contributor) & Olson, N. D. (Contributor), figshare Academic Research System, Nov 5 2018

  DOI: 10.6084/m9.figshare.c.4291514.v1, https://doi.org/10.6084%2Fm9.figshare.c.4291514.v1

  Dataset

• ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

  Shiffer, A. (Contributor), Kelley, S. T. (Contributor), Bolyen, E. (Contributor), Fouquier, J. (Contributor), Rideout, J. R. (Contributor), Caporaso, J. G. (Contributor), McDonald, D. (Contributor), Chase, J. (Contributor) & Knight, R. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3641909.v1, https://doi.org/10.6084%2Fm9.figshare.c.3641909.v1

  Dataset

• Data from: Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity

  Lauber, C. (Contributor), Stutz, W. E. (Contributor), Snowberg, L. K. (Contributor), Knight, R. (Contributor), Bolnick, D. I. (Contributor) & Caporaso, J. G. (Contributor), DRYAD, Oct 1 2014

  DOI: 10.5061/dryad.2s07s, http://datadryad.org/stash/dataset/doi:10.5061/dryad.2s07s

  Dataset

• Additional file 4 of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Khoruts, A. (Contributor), Caporaso, J. G. (Contributor), Lipson, K. S. (Contributor), Geis, E. (Contributor), Gregory, A. C. (Contributor), Borody, T. (Contributor), Pollard, E. L. (Contributor), Sullivan, M. B. (Contributor), Kang, D.-W. (Contributor), Adams, J. B. (Contributor), Chittick, L. (Contributor), McDonough-Means, S. (Contributor), Sadowsky, M. J. (Contributor), Maldonado, J. (Contributor), Krajmalnik-Brown, R. (Contributor), Fasano, A. (Contributor) & Roux, S. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866_d4.v1

  Dataset

• Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Adams, J. B. (Contributor), Sullivan, M. B. (Contributor), Chittick, L. (Contributor), Roux, S. (Contributor), Geis, E. (Contributor), Kang, D.-W. (Contributor), Krajmalnik-Brown, R. (Contributor), Pollard, E. L. (Contributor), Caporaso, J. G. (Contributor), Lipson, K. S. (Contributor), Maldonado, J. (Contributor), McDonough-Means, S. (Contributor), Gregory, A. C. (Contributor), Khoruts, A. (Contributor), Sadowsky, M. J. (Contributor), Fasano, A. (Contributor) & Borody, T. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866.v1

  Dataset

• Additional file 5: Dataset S2. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Sadowsky, M. J. (Contributor), Maldonado, J. (Contributor), McDonough-Means, S. (Contributor), Lipson, K. S. (Contributor), Krajmalnik-Brown, R. (Contributor), Kang, D.-W. (Contributor), Roux, S. (Contributor), Chittick, L. (Contributor), Caporaso, J. G. (Contributor), Fasano, A. (Contributor), Gregory, A. C. (Contributor), Adams, J. B. (Contributor), Geis, E. (Contributor), Pollard, E. L. (Contributor), Sullivan, M. B. (Contributor), Khoruts, A. (Contributor) & Borody, T. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866_d1.v1

  Dataset

• Additional file 2: Dataset S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Chittick, L. (Contributor), Khoruts, A. (Contributor), Maldonado, J. (Contributor), Krajmalnik-Brown, R. (Contributor), Roux, S. (Contributor), Pollard, E. L. (Contributor), Sadowsky, M. J. (Contributor), Geis, E. (Contributor), Borody, T. (Contributor), Gregory, A. C. (Contributor), Adams, J. B. (Contributor), Sullivan, M. B. (Contributor), McDonough-Means, S. (Contributor), Fasano, A. (Contributor), Lipson, K. S. (Contributor), Caporaso, J. G. (Contributor) & Kang, D.-W. (Contributor), figshare Academic Research System, Jan 1 2017

  DOI: 10.6084/m9.figshare.c.3674866_d2.v1, https://doi.org/10.6084%2Fm9.figshare.c.3674866_d2.v1

  Dataset

• Additional file 3 of Leptospira in river and soil in a highly endemic area of Ecuador

  Barragan, V. (Contributor), Marks, J. (Contributor), Chiriboga, J. (Contributor), Miller, E. (Contributor), Weddell, C. (Contributor), Mihaljevic, J. R. (Contributor), Luna, L. (Contributor), Caporaso, J. G. (Contributor), Jiménez, D. J. (Contributor), Pearson, T. (Contributor), Nieto, N. (Contributor), Olivas, S. (Contributor), Aleman, J. (Contributor), Izurieta, R. (Contributor) & Trueba, G. (Contributor), figshare Academic Research System, Jan 1 2021

  DOI: 10.6084/m9.figshare.13543921.v1, https://doi.org/10.6084%2Fm9.figshare.13543921.v1

  Dataset

• Data for: Development of a PEO-based lithium ion conductive epoxy resin polymer electrolyte

  Lindberg, G. E. (Contributor), Browder, C. C. (Contributor), Cook, J. (Contributor), Marsh, P. (Contributor), Liebig, A. (Contributor), Ciocanel, C. (Contributor) & Andrews, W. T. (Contributor), Mendeley Data, Oct 13 2018

  DOI: 10.17632/dvprjvngzf.1, https://data.mendeley.com/datasets/dvprjvngzf

  Dataset

• Additional file 2 of Leptospira in river and soil in a highly endemic area of Ecuador

  Caporaso, J. G. (Contributor), Pearson, T. (Contributor), Jiménez, D. J. (Contributor), Trueba, G. (Contributor), Chiriboga, J. (Contributor), Izurieta, R. (Contributor), Barragan, V. (Contributor), Weddell, C. (Contributor), Aleman, J. (Contributor), Luna, L. (Contributor), Nieto, N. (Contributor), Olivas, S. (Contributor), Marks, J. (Contributor), Miller, E. (Contributor) & Mihaljevic, J. R. (Contributor), figshare Academic Research System, Jan 1 2021

  DOI: 10.6084/m9.figshare.13543915.v1, https://doi.org/10.6084%2Fm9.figshare.13543915.v1

  Dataset

• Species abundance information improves sequence taxonomy classification accuracy - HMP and NCBI data

  Knight, R. (Contributor), Bokulich, N. A. (Contributor), Kaehler, B. D. (Contributor), McDonald, D. (Contributor), Gregory Caporaso, C. J. (Contributor) & Huttley, G. A. (Contributor), Zenodo, Jan 26 2019

  DOI: 10.5281/zenodo.2549777, https://zenodo.org/record/2549777

  Dataset

• Additional file 1: Figure S1. of ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

  Caporaso, J. G. (Contributor), Rideout, J. R. (Contributor), Shiffer, A. (Contributor), McDonald, D. (Contributor), Kelley, S. T. (Contributor), Bolyen, E. (Contributor), Knight, R. (Contributor), Chase, J. (Contributor) & Fouquier, J. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3641909_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3641909_d1.v1

  Dataset

• Data from: Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

  Fierer, N. (Contributor), Adams, B. J. (Contributor), Nielsen, U. N. (Contributor), Bates, S. T. (Contributor), Owens, S. (Contributor), Lauber, C. L. (Contributor), Leff, J. W. (Contributor), Wall, D. H. (Contributor), Gilbert, J. A. (Contributor) & Caporaso, J. G. (Contributor), DRYAD, Dec 26 2012

  DOI: 10.5061/dryad.q2n78, http://datadryad.org/stash/dataset/doi:10.5061/dryad.q2n78

  Dataset