Single Molecule Biophysics, Center for (SMB)

Scholarly Works

Scholarly Works per year 1970 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2020

• 54666 Citations
• 776 Article
• 128 Conference contribution
• 47 Review article
• 30 Chapter
• 57 More
  • 20 Comment/debate
  • 20 Editorial
  • 5 Conference article
  • 5 Short survey
  • 4 Letter
  • 3 Book

Scholarly Works per year

Scholarly Works per year

Search results

• 2019

  Paranemic Crossover DNA: There and Back Again

  Wang, X., Chandrasekaran, A. R., Shen, Z., Ohayon, Y. P., Wang, T., Kizer, M. E., Sha, R., Mao, C., Yan, H., Zhang, X., Liao, S., Ding, B., Chakraborty, B., Jonoska, N., Niu, D., Gu, H., Chao, J., Gao, X., Li, Y., Ciengshin, T., & 1 othersSeeman, N. C., May 22 2019, In: Chemical reviews. 119, 10, p. 6273-6289 17 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cohesion 100%
  • Double-Stranded DNA 87%
  • Molecular Structure 56%
  • Nanomaterial 51%
  • Molecule 28%
  58 Scopus citations

• Recent innovations in membrane-protein structural biology [version 1; referees: 3 approved]

  Allen, J., 2019, In: F1000Research. 8, 211.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Membrane Proteins 100%
  • X-Rays 69%
  • Protein 49%
  • Proteins 44%
  • Cryoelectron Microscopy 40%
  14 Scopus citations
• 2018

  Highly Multiplexed Single-Cell Protein Analysis

  Mondal, M., Liao, R. & Guo, J., May 17 2018, In: Chemistry - A European Journal. 24, 28, p. 7083-7091 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Proteomics 100%
  • Proteins 68%
  • Molecular imaging 65%
  • Personalized medicine 54%
  • Biopsy 48%
  14 Scopus citations
• 2017

  Current and emerging techniques for antibiotic susceptibility tests

  Syal, K., Mo, M., Yu, H., Iriya, R., Jing, W., Guodong, S., Wang, S., Grys, T. E. & Haydel, S., 2017, In: Theranostics. 7, 7, p. 1795-1805 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Anti-Bacterial Agents 100%
  • Microbial Genes 61%
  • Bacteria 51%
  • Wit and Humor 50%
  • Armed Conflicts 40%
  118 Scopus citations

• Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation

  Li, J., Green, A., Yan, H. & Fan, C., Sep 25 2017, In: Nature Chemistry. 9, 11, p. 1056-1067 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nucleic acids 100%
  • Nucleic Acid Structure 96%
  • Nanostructures 83%
  • RNA 82%
  • Nanotechnology 78%
  203 Scopus citations

• Plasmonic imaging of electrochemical impedance

  Yuan, L. & Wang, W., Jun 12 2017, In: Annual Review of Analytical Chemistry. 10, p. 183-200 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Impedance Spectroscopy 100%
  • Microarrays 70%
  • Instrumentation 63%
  • Application 61%
  • Drug 34%
  27 Scopus citations
• 2016

  Design of dinuclear manganese cofactors for bacterial reaction centers

  Olson, T. L., Espiritu, E., Edwardraja, S., Simmons, C. R., Williams, J., Ghirlanda, G. & Allen, J., May 1 2016, In: Biochimica et Biophysica Acta - Bioenergetics. 1857, 5, p. 539-547 9 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Manganese 100%
  • Cofactor 76%
  • Protein 34%
  • Metals 33%
  • Proteins 30%
  15 Scopus citations
• 2015

  DNA Nanostructures as Programmable Biomolecular Scaffolds

  Yang, Y. R., Liu, Y. & Yan, H., Aug 19 2015, In: Bioconjugate chemistry. 26, 8, p. 1381-1395 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanostructures 100%
  • Scaffolds 97%
  • DNA 84%
  • Nanomaterial 51%
  • Protein Structure 26%
  114 Scopus citations

• DNA nanotechnology for nanophotonic applications

  Samanta, A., Banerjee, S. & Liu, Y., Feb 14 2015, In: Nanoscale. 7, 6, p. 2210-2220 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Nanophotonics 100%
  • Nanotechnology 72%
  • Fluorescence Lifetime 65%
  • DNA 65%
  • Organic Molecule 58%
  64 Scopus citations
• 2014

  Detection, counting, and imaging of single nanoparticles

  Wang, W., Jan 7 2014, In: Analytical chemistry. 86, 1, p. 2-14 13 p.

  Research output: Contribution to journal › Review article › peer-review
  122 Scopus citations

• Photophysical processes in single molecule organic fluorescent probes

  Stennett, E. M. S., Ciuba, M. A. & Levitus, M., Feb 21 2014, In: Chemical Society Reviews. 43, 4, p. 1057-1075 19 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Fluorescent Probe 100%
  • Organic Molecule 99%
  • Photobleaching 63%
  • Fluorescence 61%
  • Fluorescence Microscopy 54%
  211 Scopus citations

• Structural DNA nanotechnology: State of the art and future perspective

  Nangreave, J., Liu, Y. & Yan, H., Aug 13 2014, In: Journal of the American Chemical Society. 136, 32, p. 11198-11211 14 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Nanotechnology 100%
  • DNA 86%
  • Block Like Crystal 56%
  • Nanomaterial 52%
  • Drug 44%
  428 Scopus citations

• The three-dimensional structures of bacterial reaction centers

  Olson, T. L., Williams, J. & Allen, J., May 2014, In: Photosynthesis research. 120, 1-2, p. 87-98 12 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Photosynthesis 100%
  • Bacterial Structures 95%
  • photosynthesis 50%
  • electron transfer 42%
  • Photosynthetic Reaction Center Complex Proteins 41%
  15 Scopus citations
• 2013

  De novo design of functional proteins: Toward artificial hydrogenases

  Faiella, M., Roy, A., Sommer, D. & Ghirlanda, G., Nov 2013, In: Biopolymers. 100, 6, p. 558-571 14 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Hydrogenase 100%
  • Proteins 59%
  • Peptides 28%
  • Protein 27%
  • Catalysts 18%
  21 Scopus citations

• Emerging protein array technologies for proteomics

  Lee, J. R., Magee, D., Gaster, R. S., LaBaer, J. & Wang, S. X., Feb 2013, In: Expert Review of Proteomics. 10, 1, p. 65-75 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Protein Array Analysis 100%
  • Proteomics 72%
  • Technology 51%
  • Protein 32%
  • Immobilization 20%
  48 Scopus citations

• Functionalized DNA nanostructures for nanomedicine

  Liu, X., Liu, Y. & Yan, H., Aug 2013, In: Israel Journal of Chemistry. 53, 8, p. 555-566 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanomaterial 100%
  • Application 49%
  • Safety 45%
  9 Scopus citations

• Influence of protein interactions on oxidation/reduction midpoint potentials of cofactors in natural and de novo metalloproteins

  Olson, T. L., Williams, J. & Allen, J., 2013, In: Biochimica et Biophysica Acta - Bioenergetics. 1827, 8-9, p. 914-922 9 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Metalloproteins 100%
  • Metalloprotein 78%
  • Oxidation-Reduction 60%
  • Cofactor 58%
  • Protein 26%
  23 Scopus citations
• 2012

  Biochemistry and semiconductor electronicsthe next big hit for silicon?

  Lindsay, S., Apr 25 2012, In: Journal of Physics Condensed Matter. 24, 16, 164201.

  Research output: Contribution to journal › Review article › peer-review

  • Biochemistry 100%
  • Personalized medicine 98%
  • Biomolecules 96%
  • biochemistry 90%
  • very large scale integration 81%
  15 Scopus citations

• Electron-phonon interactions in atomic and molecular devices

  Hihath, J., Sep 2012, In: Progress in Surface Science. 87, 9-12, p. 189-208 20 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Electron-phonon interactions 100%
  • Electron-Phonon Interaction 77%
  • electron phonon interactions 53%
  • Charge transfer 41%
  • Spectroscopy 36%
  21 Scopus citations

• Responsible healthcare innovation: Anticipatory governance of nanodiagnostics for theranostics medicine

  Fisher, E., Boenink, M., Van Der Burg, S. & Woodbury, N., Nov 2012, In: Expert Review of Molecular Diagnostics. 12, 8, p. 857-870 14 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Theranostic Nanomedicine 100%
  • Medicine 55%
  • Delivery of Health Care 46%
  • Nanotechnology 22%
  • Molecular Pathology 21%
  17 Scopus citations
• 2011

  Challenges and opportunities for structural DNA nanotechnology

  Pinheiro, A. V., Han, D., Shih, W. M. & Yan, H., Dec 2011, In: Nature nanotechnology. 6, 12, p. 763-772 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology 100%
  • nanotechnology 98%
  • DNA 89%
  • deoxyribonucleic acid 78%
  • Nanomaterial 36%
  1024 Scopus citations

• The evolutionary pathway from anoxygenic to oxygenic photosynthesis examined by comparison of the properties of photosystem II and bacterial reaction centers

  Allen, J. & Williams, J., Jan 2011, In: Photosynthesis research. 107, 1, p. 59-69 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Photosystem II Protein Complex 100%
  • Photosynthesis 88%
  • photosystem II 57%
  • Electron Donor 54%
  • photosynthesis 44%
  29 Scopus citations
• 2010

  DNA origami: A history and current perspective

  Nangreave, J., Han, D., Liu, Y. & Yan, H., Oct 1 2010, In: Current Opinion in Chemical Biology. 14, 5, p. 608-615 8 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • History 100%
  • Probe 80%
  • DNA 74%
  • Metal Nanoparticle 65%
  • Water Soluble 51%
  141 Scopus citations

• DNA Self-assembly for Nanomedicine

  Chhabra, R., Sharma, J., Liu, Y., Rinker, S. & Yan, H., Apr 2010, In: Advanced Drug Delivery Reviews. 62, 6, p. 617-625 9 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Nanomedicine 100%
  • Nanomaterial 49%
  • DNA 43%
  • Supramolecular Structure 41%
  • Molecule 27%
  112 Scopus citations

• Graphene field-effect transistors: Electrochemical gating, interfacial capacitance, and biosensing applications

  Chen, F., Qing, Q. & Xia, J., Oct 4 2010, In: Chemistry - An Asian Journal. 5, 10, p. 2144-2153 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Graphite 100%
  • Field Effect 72%
  • Graphene 51%
  • Charge Transfer 33%
  • Surface Potential 26%
  57 Scopus citations

• Recognition tunneling

  Lindsay, S., He, J., Sankey, O., Hapala, P., Jelinek, P., Chang, S. & Huang, S., 2010, In: Nanotechnology. 21, 26, 262001.

  Research output: Contribution to journal › Review article › peer-review

  • Tunneling 100%
  • Molecules 95%
  • Electrodes 60%
  • Behavior as Electrode 49%
  • Tunnel junctions 27%
  72 Scopus citations
• 2009

  Diffusive transport in quasi-2D and quasi-1D electron systems

  Knezevic, I., Ramayya, E. B., Vasileska, D. & Goodnick, S., 2009, In: Journal of Computational and Theoretical Nanoscience. 6, 8, p. 1725-1753 29 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Electron Transport 100%
  • Electron 63%
  • Electrons 62%
  • Phonon scattering 56%
  • Semiconductor materials 55%
  29 Scopus citations

• DNA sequence-dependent variation in nucleosome structure, stability, and dynamics detected by a FRET-based analysis

  Kelbauskas, L., Woodbury, N. & Lohr, D., Feb 2009, In: Biochemistry and Cell Biology. 87, 1, p. 323-335 13 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Energy Transfer 100%
  • Resonance Energy 96%
  • Nucleosomes 89%
  • Fluorescence Resonance Energy Transfer 74%
  • Conformational Transition 28%
  17 Scopus citations

• Structures of proteins and cofactors: X-ray crystallography

  Allen, J., Seng, C. & Larson, C., Nov 2009, In: Photosynthesis research. 102, 2, p. 231-240 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • X Ray Crystallography 100%
  • protein structure 75%
  • X-ray diffraction 72%
  • Cofactor 67%
  • Proteobacteria 66%
  6 Scopus citations
• 2008

  Comparison of bacterial reaction centers and photosystem II

  Kálmán, L., Williams, J. & Allen, J., Oct 2008, In: Photosynthesis research. 98, 1-3, p. 643-655 13 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Photosystem II Protein Complex 100%
  • photosystem II 57%
  • Electron Donor 54%
  • Proton Transfer 53%
  • Electrons 47%
  20 Scopus citations

• Creating protein biocatalysts as tools for future industrial applications

  Chaput, J. C., Woodbury, N., Stearns, L. A. & Williams, B. A. R., Aug 2008, In: Expert Opinion on Biological Therapy. 8, 8, p. 1087-1098 12 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Enzymes 100%
  • Catalyst 75%
  • Protein 75%
  • Proteins 67%
  • Application 57%
  20 Scopus citations

• Genetic sequencing

  Lindsay, S., May 1 2008, In: Bulletin of the Atomic Scientists. 64, 2, p. 50-53 4 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Modeling heating effects in nanoscale devices: The present and the future

  Vasileska, D., Raleva, K. & Goodnick, S., Jun 2008, In: Journal of Computational Electronics. 7, 2, p. 66-93 28 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Heating 100%
  • Heat Transport 76%
  • Heat 61%
  • Modeling 53%
  • heating 52%
  32 Scopus citations

• Rapid measurement of single-molecule conductance

  Hihath, J., Jul 2 2008, In: Nanotechnology. 19, 26, 265204.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Molecules 100%
  • Conductance 98%
  • Electrodes 62%
  • Behavior as Electrode 51%
  • Amino acids 24%
  27 Scopus citations

• Semiconductor device modeling

  Vasileska, D., Mamaluy, D., Khan, H. R., Raleva, K. & Goodnick, S., Jun 2008, In: Journal of Computational and Theoretical Nanoscience. 5, 6, p. 999-1030 32 p.

  Research output: Contribution to journal › Review article › peer-review

  • Semiconductor device models 100%
  • Semiconductor Devices 80%
  • Quantum Transport 65%
  • semiconductor devices 60%
  • Semiconductor 45%
  13 Scopus citations

• The potential and challenges of nanopore sequencing

  Branton, D., Deamer, D. W., Marziali, A., Bayley, H., Benner, S. A., Butler, T., Di Ventra, M., Garaj, S., Hibbs, A., Huang, X., Jovanovich, S. B., Krstic, P. S., Lindsay, S., Ling, X. S., Mastrangelo, C. H., Meller, A., Oliver, J. S., Pershin, Y. V., Ramsey, J. M., Riehn, R., & 5 othersSoni, G. V., Tabard-Cossa, V., Wanunu, M., Wiggin, M. & Schloss, J. A., Oct 2008, In: Nature biotechnology. 26, 10, p. 1146-1153 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanopore Sequencing 100%
  • Nanopores 91%
  • DNA 60%
  • Molecules 57%
  • Single Molecule Detection 40%
  1915 Scopus citations
• 2007

  Nationalism and cultures of democracy

  Calhoun, C., Dec 2007, In: Public Culture. 19, 1, p. 151-173 23 p.

  Research output: Contribution to journal › Review article › peer-review
  21 Scopus citations
• 2006

  DNA nanotechnology: A rapidly evolving field

  Lund, K., Williams, B., Ke, Y., Liu, Y. & Yan, H., May 1 2006, In: Current Nanoscience. 2, 2, p. 113-122 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Nanotechnology 100%
  • DNA 86%
  • Secondary Structure 73%
  • Chemistry 48%
  • Materials Science 41%
  18 Scopus citations

• Particle-based simulation: An algorithmic perspective

  Saraniti, M., Aboud, S., Branlard, J. & Goodnick, S., Dec 2006, In: Journal of Computational Electronics. 5, 4, p. 405-410 6 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Statistical Ensemble 100%
  • Molecular Dynamics 73%
  • Dynamic Algorithms 73%
  • Solid state devices 72%
  • solid state devices 67%
  1 Scopus citations

• The privatization of risk

  Calhoun, C., Mar 2006, In: Public Culture. 18, 2, p. 257-263 7 p.

  Research output: Contribution to journal › Review article › peer-review
  20 Scopus citations
• 2005

  Measurement of electron transport properties of single molecules

  Li, X., Xu, B., Xiao, X. & Hihath, J., Jul 26 2005, In: Japanese Journal of Applied Physics, Part 1: Regular Papers and Short Notes and Review Papers. 44, 7 B, p. 5344-5347 4 p.

  Research output: Contribution to journal › Review article › peer-review

  • Electron transport properties 100%
  • Molecules 48%
  • transport properties 39%
  • Gold 27%
  • molecules 26%
  4 Scopus citations
• 2004

  Single Molecule Electronics

  Lindsay, S., Mar 1 2004, In: Electrochemical Society Interface. 13, 1, p. 26-30 5 p.

  Research output: Contribution to journal › Review article › peer-review

  • Molecules 100%
  • Microscopes 98%
  • Conductance 98%
  • Electronic equipment 86%
  • Gold nanoparticles 80%
  7 Scopus citations
• 2003

  Comparison of Electronic Transport Measurements on Organic Molecules

  Salomon, A., Cahen, D., Lindsay, S., Tomfohr, J., Engelkes, V. B. & Frisbie, C. D., Nov 17 2003, In: Advanced Materials. 15, 22, p. 1881-1890 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Molecules 100%
  • Organic Molecule 94%
  • Electrodes 62%
  • Tunneling 52%
  • Alkane 43%
  791 Scopus citations
• 2000

  Fluorescence intensity fluctuations of individual labeled DNA fragments and a DNA binding protein in solution at the single molecule level: A comparison of photobleaching, diffusion, and binding dynamics

  Daniel, D. C., Thompson, M. & Woodbury, N., Feb 17 2000, In: Journal of Physical Chemistry B. 104, 6, p. 1382-1390 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Photobleaching 100%
  • Carrier Proteins 91%
  • Thiazole Orange 88%
  • Fluorescence 65%
  • DNA 59%

• Single molecule force spectroscopy in biology using the atomic force microscope

  Zlatanova, J., Lindsay, S. & Leuba, S. H., 2000, In: Progress in Biophysics and Molecular Biology. 74, 1-2, p. 37-61 25 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Single Molecule Imaging 100%
  336 Scopus citations
• 1993

  Scanning tunneling microscopy: A chemical perspective

  Chen, C. J., Tsukada, M., Binh, V. T. & Lindsay, S. M., Sep 1 1993, In: Scanning Microscopy. 7, 3, p. 793-804 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Scanning tunneling microscopy 100%
  • Covalent bonds 61%
  • Electronic states 59%
  • Atoms 58%
  • Chemical reactions 55%
  7 Scopus citations
• 1987

  Comment on Resonant microwave absorption by dissolved DNA

  Lindsay, S. & Rupprecht, A., 1987, In: Physical Review Letters. 59, 4, p. 518 1 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • microwave absorption 100%
  • deoxyribonucleic acid 77%