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Collaborations and top research areas from the last five years
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Emerging technologies in poultry genomics: Unlocking innovation for the future of sustainable production
Zhou, H., McCarthy, F. M., Kim, T. H., Warren, W. & Zhang, G., Feb 2026, In: Poultry science. 105, 2, 106240.Research output: Contribution to journal › Article › peer-review
Open Access -
CAT-GxD: Centralized access to gene expression datasets
Roxas, B. A. P., Roxas, J. L., Guo, J. S., LeBauer, D. S., McCarthy, F., Vedantam, G. & Viswanathan, V. K., Dec 2025, In: Anaerobe. 96, 103005.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
Normative aging results in degradation of gene networks in a zebra finch basal ganglia nucleus dedicated to vocal behavior
Higgins, C. M., Vishwanath, S. H., McCarthy, F. M., Gordon, M. L., Peter, B. & Miller, J. E., May 2025, In: Neurobiology of Aging. 149, p. 19-33 15 p.Research output: Contribution to journal › Article › peer-review
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The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project
The FarmGTEx Consortium, Apr 2025, In: Nature Genetics. 57, 4, p. 786-796 11 p., 604.Research output: Contribution to journal › Article › peer-review
Open Access23 Link opens in a new tab Scopus citations -
Comparative proteomic analysis of tail regeneration in the green anole lizard, Anolis carolinensis
Xu, C., Hutchins, E. D., Eckalbar, W., Pendarvis, K., Benson, D. M., Lake, D. F., McCarthy, F. M. & Kusumi, K., Jan 2024, In: Natural Sciences. 4, 1, e20210421.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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Data from: Cross-ontology multi-level association rule mining in the Gene Ontology
Manda, P. (Contributor), Ozkan, S. (Contributor), Wang, H. (Contributor), McCarthy, F. (Contributor) & Bridges, S. M. (Contributor), ZENODO, Feb 22 2013
DOI: 10.5061/dryad.nr353, https://zenodo.org/records/5010995
Dataset
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Functional annotation for 15 diverse arthropod genomes
Saha, S. (Creator), Cooksey, A. M. (Creator), Childers, A. K. (Creator), Poelchau, M. F. (Creator) & McCarthy, F. M. (Creator), Ag Data Commons, 2021
DOI: 10.15482/usda.adc/1522860, https://data.nal.usda.gov/node/33625
Dataset
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Normative Aging Results in Degradation of Gene Networks in a Zebra Finch Basal Ganglia Nucleus Dedicated to Vocal Behavior
Higgins, C. M. (Creator), Vishwanath, S. H. (Creator), McCarthy, F. M. (Creator), Gordon, M. L. (Contributor), Peter, B. (Creator) & Miller, J. E. (Creator), University of Arizona Research Data Repository, 2025
DOI: 10.25422/azu.data.25612689.v1, https://arizona.figshare.com/articles/dataset/Normative_Aging_Results_in_Degradation_of_Gene_Networks_in_a_Zebra_Finch_Basal_Ganglia_Nucleus_Dedicated_to_Vocal_Behavior/25612689/1
Dataset
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Annotation and analysis of three crocodilian genomes
Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator), Ray, D. A. (Creator), Haussler, D. (Creator), Gabaldón, T. (Creator) & Paten, B. (Creator), GigaScience Database, Oct 21 2014
DOI: 10.5524/100125, http://gigadb.org/dataset/100125
Dataset
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Data from: Cross-ontology multi-level association rule mining in the Gene Ontology
Manda, P. (Creator), Ozkan, S. (Creator), Wang, H. (Creator), McCarthy, F. (Creator) & Bridges, S. M. (Creator), DRYAD, Feb 22 2013
DOI: 10.5061/dryad.nr353, https://datadryad.org/dataset/doi:10.5061/dryad.nr353
Dataset