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Collaborations and top research areas from the last five years
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Author Correction: A roadmap for equitable reuse of public microbiome data(Nature Microbiology, 10.1038/s41564-025-02116-2)
The Data Reuse Consortium, Jan 2026, In: Nature Microbiology. 11, 1, p. 335 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Scikit-bio: a fundamental Python library for biological omic data analysis
Aton, M., McDonald, D., Cañardo Alastuey, J., Azom, R., Batra, P., Bezshapkin, V., Bolyen, E., Cagle, A., Caporaso, J. G., Debelius, J. W., Gorlick, K., Hamsanipally, N., Hunger, L., Keluskar, A., Liao, D., Lu, Y. Y., Navas-Molina, J. A., Pitman, A., Rideout, J. R. & Sazonov, A. & 12 others, , Feb 2026, In: Nature Methods. 23, 2, p. 274-276 3 p.Research output: Contribution to journal › Letter › peer-review
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A review of engraftment assessments following fecal microbiota transplant
Herman, C., Barker, B. M., Bartelli, T. F., Chandra, V., Krajmalnik-Brown, R., Jewell, M., Li, L., Liao, C., McAllister, F., Nirmalkar, K., Xavier, J. B. & Caporaso, J. G., 2025, In: Gut microbes. 17, 1, 2525478.Research output: Contribution to journal › Review article › peer-review
Open Access10 Link opens in a new tab Scopus citations -
A roadmap for equitable reuse of public microbiome data
The Data Reuse Consortium, Oct 2025, In: Nature Microbiology. 10, 10, p. 2384-2395 12 p.Research output: Contribution to journal › Review article › peer-review
Open Access6 Link opens in a new tab Scopus citations -
Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt
Herman, C., Bolyen, E., Simard, A., Gehret, L. & Caporaso, J. G., Jul 2025, In: PLoS computational biology. 21, 7 July, e1013299.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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Additional file 5: Dataset S2. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.c.3674866_d1, https://springernature.figshare.com/articles/dataset/Additional_file_5_Dataset_S2_of_Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/4588072
Dataset
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Additional file 2: Dataset S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.c.3674866_d2.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_Dataset_S1_of_Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/4588087/1
Dataset
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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.c.3674866.v1, https://figshare.com/collections/Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/3674866/1
Dataset
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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.c.3674866, https://figshare.com/collections/Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/3674866
Dataset
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Additional file 5: Dataset S2. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.c.3674866_d1.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_Dataset_S2_of_Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/4588072/1
Dataset