A five-gene phylogeny of Pezizomycotina

Joseph W. Spatafora; Gi Ho Sung; Desiree Johnson; Cedar Hesse; Benjamin O'Rourke; Maryna Serdani; Robert Spotts; François Lutzoni; Valérie Hofstetter; Jolanta Miadlikowska; Valérie Reeb; Cécile Gueidan; Emily Fraker; Thorsten Lumbsch; Robert Lücking; Imke Schmitt; Kentaro Hosaka; André Aptroot; Claude Roux; Andrew N. Miller; David M. Geiser; Josef Hafellner; Geir Hestmark; A. Elizabeth Arnold; Burkhard Büdel; Alexandra Rauhut; David Hewitt; Wendy A. Untereiner; Mariette S. Cole; Christoph Scheidegger; Matthias Schultz; Harrie Sipman; Conrad L. Schoch

doi:10.3852/mycologia.98.6.1018

A five-gene phylogeny of Pezizomycotina

Joseph W. Spatafora, Gi Ho Sung, Desiree Johnson, Cedar Hesse, Benjamin O'Rourke, Maryna Serdani, Robert Spotts, François Lutzoni, Valérie Hofstetter, Jolanta Miadlikowska, Valérie Reeb, Cécile Gueidan, Emily Fraker, Thorsten Lumbsch, Robert Lücking, Imke Schmitt, Kentaro Hosaka, André Aptroot, Claude Roux, Andrew N. MillerDavid M. Geiser, Josef Hafellner, Geir Hestmark, A. Elizabeth Arnold, Burkhard Büdel, Alexandra Rauhut, David Hewitt, Wendy A. Untereiner, Mariette S. Cole, Christoph Scheidegger, Matthias Schultz, Harrie Sipman, Conrad L. Schoch

Research output: Contribution to journal › Article › peer-review

327 Scopus citations

Abstract

Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results fromweighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-1α) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.

Original language	English (US)
Pages (from-to)	1018-1028
Number of pages	11
Journal	Mycologia
Volume	98
Issue number	6
DOIs	https://doi.org/10.3852/mycologia.98.6.1018
State	Published - Nov 2006

Keywords

Ascoma
Ascomycota
Ascus
Evolution
Fungi
Systematics

ASJC Scopus subject areas

Physiology
Ecology, Evolution, Behavior and Systematics
Molecular Biology
Genetics
Cell Biology

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10.3852/mycologia.98.6.1018

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Spatafora, J. W., Sung, G. H., Johnson, D., Hesse, C., O'Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Miadlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T., Lücking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., ... Schoch, C. L. (2006). A five-gene phylogeny of Pezizomycotina. Mycologia, 98(6), 1018-1028. https://doi.org/10.3852/mycologia.98.6.1018

Spatafora, JW, Sung, GH, Johnson, D, Hesse, C, O'Rourke, B, Serdani, M, Spotts, R, Lutzoni, F, Hofstetter, V, Miadlikowska, J, Reeb, V, Gueidan, C, Fraker, E, Lumbsch, T, Lücking, R, Schmitt, I, Hosaka, K, Aptroot, A, Roux, C, Miller, AN, Geiser, DM, Hafellner, J, Hestmark, G, Arnold, AE, Büdel, B, Rauhut, A, Hewitt, D, Untereiner, WA, Cole, MS, Scheidegger, C, Schultz, M, Sipman, H & Schoch, CL 2006, 'A five-gene phylogeny of Pezizomycotina', Mycologia, vol. 98, no. 6, pp. 1018-1028. https://doi.org/10.3852/mycologia.98.6.1018

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abstract = "Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results fromweighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-1α) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.",

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AU - Sung, Gi Ho

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AU - Hesse, Cedar

AU - O'Rourke, Benjamin

AU - Serdani, Maryna

AU - Spotts, Robert

AU - Lutzoni, François

AU - Hofstetter, Valérie

AU - Miadlikowska, Jolanta

AU - Reeb, Valérie

AU - Gueidan, Cécile

AU - Fraker, Emily

AU - Lumbsch, Thorsten

AU - Lücking, Robert

AU - Schmitt, Imke

AU - Hosaka, Kentaro

AU - Aptroot, André

AU - Roux, Claude

AU - Miller, Andrew N.

AU - Geiser, David M.

AU - Hafellner, Josef

AU - Hestmark, Geir

AU - Arnold, A. Elizabeth

AU - Büdel, Burkhard

AU - Rauhut, Alexandra

AU - Hewitt, David

AU - Untereiner, Wendy A.

AU - Cole, Mariette S.

AU - Scheidegger, Christoph

AU - Schultz, Matthias

AU - Sipman, Harrie

AU - Schoch, Conrad L.

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KW - Ascus

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A five-gene phylogeny of Pezizomycotina

Abstract

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