Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)

Devin P. Locke; La Deana W. Hillier; Wesley C. Warren; Kim C. Worley; Lynne V. Nazareth; Donna M. Muzny; Shiaw Pyng Yang; Zhengyuan Wang; Asif T. Chinwalla; Pat Minx; Makedonka Mitreva; Lisa Cook; Kim D. Delehaunty; Catrina Fronick; Heather Schmidt; Lucinda A. Fulton; Robert S. Fulton; Joanne O. Nelson; Vincent Magrini; Craig Pohl; Tina A. Graves; Chris Markovic; Andy Cree; Huyen H. Dinh; Jennifer Hume; Christie L. Kovar; Gerald R. Fowler; Gerton Lunter; Stephen Meader; Andreas Heger; Chris P. Ponting; Tomas Marques-Bonet; Can Alkan; Lin Chen; Ze Cheng; Jeffrey M. Kidd; Evan E. Eichler; Simon White; Stephen Searle; Albert J. Vilella; Yuan Chen; Paul Flicek; Jian Ma; Brian Raney; Bernard Suh; Richard Burhans; Javier Herrero; David Haussler; Rui Faria; Olga Fernando; Fleur Darré; Domènec Farré; Elodie Gazave; Meritxell Oliva; Arcadi Navarro; Roberta Roberto; Oronzo Capozzi; Nicoletta Archidiacono; Giuliano Della Valle; Stefania Purgato; Mariano Rocchi; Miriam K. Konkel; Jerilyn A. Walker; Brygg Ullmer; Mark A. Batzer; Arian F.A. Smit; Robert Hubley; Claudio Casola; Daniel R. Schrider; Matthew W. Hahn; Victor Quesada; Xose S. Puente; Gonzalo R. Ordoñez; Carlos López-Otín; Tomas Vinar; Brona Brejova; Aakrosh Ratan; Robert S. Harris; Webb Miller; Carolin Kosiol; Heather A. Lawson; Vikas Taliwal; André L. Martins; Adam Siepel; Arindam RoyChoudhury; Xin Ma; Jeremiah Degenhardt; Carlos D. Bustamante; Ryan N. Gutenkunst; Thomas Mailund; Julien Y. Dutheil; Asger Hobolth; Mikkel H. Schierup; Oliver A. Ryder; Yuko Yoshinaga; Pieter J. de Jong; George M. Weinstock; Jeffrey Rogers; Elaine R. Mardis; Richard A. Gibbs; Richard K. Wilson

doi:10.1038/s41586-022-04799-7

Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)

Devin P. Locke, La Deana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny, Shiaw Pyng Yang, Zhengyuan Wang, Asif T. Chinwalla, Pat Minx, Makedonka Mitreva, Lisa Cook, Kim D. Delehaunty, Catrina Fronick, Heather Schmidt, Lucinda A. Fulton, Robert S. Fulton, Joanne O. Nelson, Vincent Magrini, Craig PohlTina A. Graves, Chris Markovic, Andy Cree, Huyen H. Dinh, Jennifer Hume, Christie L. Kovar, Gerald R. Fowler, Gerton Lunter, Stephen Meader, Andreas Heger, Chris P. Ponting, Tomas Marques-Bonet, Can Alkan, Lin Chen, Ze Cheng, Jeffrey M. Kidd, Evan E. Eichler, Simon White, Stephen Searle, Albert J. Vilella, Yuan Chen, Paul Flicek, Jian Ma, Brian Raney, Bernard Suh, Richard Burhans, Javier Herrero, David Haussler, Rui Faria, Olga Fernando, Fleur Darré, Domènec Farré, Elodie Gazave, Meritxell Oliva, Arcadi Navarro, Roberta Roberto, Oronzo Capozzi, Nicoletta Archidiacono, Giuliano Della Valle, Stefania Purgato, Mariano Rocchi, Miriam K. Konkel, Jerilyn A. Walker, Brygg Ullmer, Mark A. Batzer, Arian F.A. Smit, Robert Hubley, Claudio Casola, Daniel R. Schrider, Matthew W. Hahn, Victor Quesada, Xose S. Puente, Gonzalo R. Ordoñez, Carlos López-Otín, Tomas Vinar, Brona Brejova, Aakrosh Ratan, Robert S. Harris, Webb Miller, Carolin Kosiol, Heather A. Lawson, Vikas Taliwal, André L. Martins, Adam Siepel, Arindam RoyChoudhury, Xin Ma, Jeremiah Degenhardt, Carlos D. Bustamante, Ryan N. Gutenkunst, Thomas Mailund, Julien Y. Dutheil, Asger Hobolth, Mikkel H. Schierup, Oliver A. Ryder, Yuko Yoshinaga, Pieter J. de Jong, George M. Weinstock, Jeffrey Rogers, Elaine R. Mardis, Richard A. Gibbs, Richard K. Wilson

Research output: Contribution to journal › Comment/debate › peer-review

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Abstract

In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al.1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to their findings. In addition, Banes et al.1 find that one of the orang-utans that we had labelled as a male Sumatran is in fact a female Tapanuli orang-utan (an orang-utan species that was unknown at the time of publication of our original Article and that was first reported in 2017 (ref. 2)). While we here correct the original tables to display the correct names and IDs of the individuals studied, we do not correct the analyses in the original paper since the Tapanuli species was discovered only after we had concluded our study. We refer the reader to Banes et al.1 for further information. In the main text, the sentence “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, five Sumatran and five Bornean, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)” should have read “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, four Sumatran, five Bornean and one Tapanuli, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)”. In addition, the sentence “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, and five Sumatran) (Supplementary Information section 4)” should have read “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, four Sumatran and one Tapanuli) (Supplementary Information section 4).

Original language	English (US)
Pages (from-to)	E36
Journal	Nature
Volume	608
Issue number	7924
DOIs	https://doi.org/10.1038/s41586-022-04799-7
State	Published - Aug 25 2022

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Locke, D. P., Hillier, L. D. W., Warren, W. C., Worley, K. C., Nazareth, L. V., Muzny, D. M., Yang, S. P., Wang, Z., Chinwalla, A. T., Minx, P., Mitreva, M., Cook, L., Delehaunty, K. D., Fronick, C., Schmidt, H., Fulton, L. A., Fulton, R. S., Nelson, J. O., Magrini, V., ... Wilson, R. K. (2022). Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687). Nature, 608(7924), E36. https://doi.org/10.1038/s41586-022-04799-7

Locke, DP, Hillier, LDW, Warren, WC, Worley, KC, Nazareth, LV, Muzny, DM, Yang, SP, Wang, Z, Chinwalla, AT, Minx, P, Mitreva, M, Cook, L, Delehaunty, KD, Fronick, C, Schmidt, H, Fulton, LA, Fulton, RS, Nelson, JO, Magrini, V, Pohl, C, Graves, TA, Markovic, C, Cree, A, Dinh, HH, Hume, J, Kovar, CL, Fowler, GR, Lunter, G, Meader, S, Heger, A, Ponting, CP, Marques-Bonet, T, Alkan, C, Chen, L, Cheng, Z, Kidd, JM, Eichler, EE, White, S, Searle, S, Vilella, AJ, Chen, Y, Flicek, P, Ma, J, Raney, B, Suh, B, Burhans, R, Herrero, J, Haussler, D, Faria, R, Fernando, O, Darré, F, Farré, D, Gazave, E, Oliva, M, Navarro, A, Roberto, R, Capozzi, O, Archidiacono, N, Della Valle, G, Purgato, S, Rocchi, M, Konkel, MK, Walker, JA, Ullmer, B, Batzer, MA, Smit, AFA, Hubley, R, Casola, C, Schrider, DR, Hahn, MW, Quesada, V, Puente, XS, Ordoñez, GR, López-Otín, C, Vinar, T, Brejova, B, Ratan, A, Harris, RS, Miller, W, Kosiol, C, Lawson, HA, Taliwal, V, Martins, AL, Siepel, A, RoyChoudhury, A, Ma, X, Degenhardt, J, Bustamante, CD, Gutenkunst, RN, Mailund, T, Dutheil, JY, Hobolth, A, Schierup, MH, Ryder, OA, Yoshinaga, Y, de Jong, PJ, Weinstock, GM, Rogers, J, Mardis, ER, Gibbs, RA & Wilson, RK 2022, 'Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)', Nature, vol. 608, no. 7924, pp. E36. https://doi.org/10.1038/s41586-022-04799-7

@article{669b909b75f64191bfefea550e5cdea1,

title = "Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)",

abstract = "In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al.1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to their findings. In addition, Banes et al.1 find that one of the orang-utans that we had labelled as a male Sumatran is in fact a female Tapanuli orang-utan (an orang-utan species that was unknown at the time of publication of our original Article and that was first reported in 2017 (ref. 2)). While we here correct the original tables to display the correct names and IDs of the individuals studied, we do not correct the analyses in the original paper since the Tapanuli species was discovered only after we had concluded our study. We refer the reader to Banes et al.1 for further information. In the main text, the sentence “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, five Sumatran and five Bornean, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)” should have read “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, four Sumatran, five Bornean and one Tapanuli, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)”. In addition, the sentence “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, and five Sumatran) (Supplementary Information section 4)” should have read “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, four Sumatran and one Tapanuli) (Supplementary Information section 4).",

author = "Locke, {Devin P.} and Hillier, {La Deana W.} and Warren, {Wesley C.} and Worley, {Kim C.} and Nazareth, {Lynne V.} and Muzny, {Donna M.} and Yang, {Shiaw Pyng} and Zhengyuan Wang and Chinwalla, {Asif T.} and Pat Minx and Makedonka Mitreva and Lisa Cook and Delehaunty, {Kim D.} and Catrina Fronick and Heather Schmidt and Fulton, {Lucinda A.} and Fulton, {Robert S.} and Nelson, {Joanne O.} and Vincent Magrini and Craig Pohl and Graves, {Tina A.} and Chris Markovic and Andy Cree and Dinh, {Huyen H.} and Jennifer Hume and Kovar, {Christie L.} and Fowler, {Gerald R.} and Gerton Lunter and Stephen Meader and Andreas Heger and Ponting, {Chris P.} and Tomas Marques-Bonet and Can Alkan and Lin Chen and Ze Cheng and Kidd, {Jeffrey M.} and Eichler, {Evan E.} and Simon White and Stephen Searle and Vilella, {Albert J.} and Yuan Chen and Paul Flicek and Jian Ma and Brian Raney and Bernard Suh and Richard Burhans and Javier Herrero and David Haussler and Rui Faria and Olga Fernando and Fleur Darr{\'e} and Dom{\`e}nec Farr{\'e} and Elodie Gazave and Meritxell Oliva and Arcadi Navarro and Roberta Roberto and Oronzo Capozzi and Nicoletta Archidiacono and {Della Valle}, Giuliano and Stefania Purgato and Mariano Rocchi and Konkel, {Miriam K.} and Walker, {Jerilyn A.} and Brygg Ullmer and Batzer, {Mark A.} and Smit, {Arian F.A.} and Robert Hubley and Claudio Casola and Schrider, {Daniel R.} and Hahn, {Matthew W.} and Victor Quesada and Puente, {Xose S.} and Ordo{\~n}ez, {Gonzalo R.} and Carlos L{\'o}pez-Ot{\'i}n and Tomas Vinar and Brona Brejova and Aakrosh Ratan and Harris, {Robert S.} and Webb Miller and Carolin Kosiol and Lawson, {Heather A.} and Vikas Taliwal and Martins, {Andr{\'e} L.} and Adam Siepel and Arindam RoyChoudhury and Xin Ma and Jeremiah Degenhardt and Bustamante, {Carlos D.} and Gutenkunst, {Ryan N.} and Thomas Mailund and Dutheil, {Julien Y.} and Asger Hobolth and Schierup, {Mikkel H.} and Ryder, {Oliver A.} and Yuko Yoshinaga and {de Jong}, {Pieter J.} and Weinstock, {George M.} and Jeffrey Rogers and Mardis, {Elaine R.} and Gibbs, {Richard A.} and Wilson, {Richard K.}",

note = "Publisher Copyright: {\textcopyright} The Author(s) 2022.",

year = "2022",

month = aug,

day = "25",

doi = "10.1038/s41586-022-04799-7",

language = "English (US)",

volume = "608",

pages = "E36",

journal = "Nature",

issn = "0028-0836",

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TY - JOUR

T1 - Author Correction

T2 - Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)

AU - Locke, Devin P.

AU - Hillier, La Deana W.

AU - Warren, Wesley C.

AU - Worley, Kim C.

AU - Nazareth, Lynne V.

AU - Muzny, Donna M.

AU - Yang, Shiaw Pyng

AU - Wang, Zhengyuan

AU - Chinwalla, Asif T.

AU - Minx, Pat

AU - Mitreva, Makedonka

AU - Cook, Lisa

AU - Delehaunty, Kim D.

AU - Fronick, Catrina

AU - Schmidt, Heather

AU - Fulton, Lucinda A.

AU - Fulton, Robert S.

AU - Nelson, Joanne O.

AU - Magrini, Vincent

AU - Pohl, Craig

AU - Graves, Tina A.

AU - Markovic, Chris

AU - Cree, Andy

AU - Dinh, Huyen H.

AU - Hume, Jennifer

AU - Kovar, Christie L.

AU - Fowler, Gerald R.

AU - Lunter, Gerton

AU - Meader, Stephen

AU - Heger, Andreas

AU - Ponting, Chris P.

AU - Marques-Bonet, Tomas

AU - Alkan, Can

AU - Chen, Lin

AU - Cheng, Ze

AU - Kidd, Jeffrey M.

AU - Eichler, Evan E.

AU - White, Simon

AU - Searle, Stephen

AU - Vilella, Albert J.

AU - Chen, Yuan

AU - Flicek, Paul

AU - Ma, Jian

AU - Raney, Brian

AU - Suh, Bernard

AU - Burhans, Richard

AU - Herrero, Javier

AU - Haussler, David

AU - Faria, Rui

AU - Fernando, Olga

AU - Darré, Fleur

AU - Farré, Domènec

AU - Gazave, Elodie

AU - Oliva, Meritxell

AU - Navarro, Arcadi

AU - Roberto, Roberta

AU - Capozzi, Oronzo

AU - Archidiacono, Nicoletta

AU - Della Valle, Giuliano

AU - Purgato, Stefania

AU - Rocchi, Mariano

AU - Konkel, Miriam K.

AU - Walker, Jerilyn A.

AU - Ullmer, Brygg

AU - Batzer, Mark A.

AU - Smit, Arian F.A.

AU - Hubley, Robert

AU - Casola, Claudio

AU - Schrider, Daniel R.

AU - Hahn, Matthew W.

AU - Quesada, Victor

AU - Puente, Xose S.

AU - Ordoñez, Gonzalo R.

AU - López-Otín, Carlos

AU - Vinar, Tomas

AU - Brejova, Brona

AU - Ratan, Aakrosh

AU - Harris, Robert S.

AU - Miller, Webb

AU - Kosiol, Carolin

AU - Lawson, Heather A.

AU - Taliwal, Vikas

AU - Martins, André L.

AU - Siepel, Adam

AU - RoyChoudhury, Arindam

AU - Ma, Xin

AU - Degenhardt, Jeremiah

AU - Bustamante, Carlos D.

AU - Gutenkunst, Ryan N.

AU - Mailund, Thomas

AU - Dutheil, Julien Y.

AU - Hobolth, Asger

AU - Schierup, Mikkel H.

AU - Ryder, Oliver A.

AU - Yoshinaga, Yuko

AU - de Jong, Pieter J.

AU - Weinstock, George M.

AU - Rogers, Jeffrey

AU - Mardis, Elaine R.

AU - Gibbs, Richard A.

AU - Wilson, Richard K.

PY - 2022/8/25

Y1 - 2022/8/25

N2 - In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al.1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to their findings. In addition, Banes et al.1 find that one of the orang-utans that we had labelled as a male Sumatran is in fact a female Tapanuli orang-utan (an orang-utan species that was unknown at the time of publication of our original Article and that was first reported in 2017 (ref. 2)). While we here correct the original tables to display the correct names and IDs of the individuals studied, we do not correct the analyses in the original paper since the Tapanuli species was discovered only after we had concluded our study. We refer the reader to Banes et al.1 for further information. In the main text, the sentence “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, five Sumatran and five Bornean, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)” should have read “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, four Sumatran, five Bornean and one Tapanuli, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)”. In addition, the sentence “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, and five Sumatran) (Supplementary Information section 4)” should have read “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, four Sumatran and one Tapanuli) (Supplementary Information section 4).

AB - In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al.1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to their findings. In addition, Banes et al.1 find that one of the orang-utans that we had labelled as a male Sumatran is in fact a female Tapanuli orang-utan (an orang-utan species that was unknown at the time of publication of our original Article and that was first reported in 2017 (ref. 2)). While we here correct the original tables to display the correct names and IDs of the individuals studied, we do not correct the analyses in the original paper since the Tapanuli species was discovered only after we had concluded our study. We refer the reader to Banes et al.1 for further information. In the main text, the sentence “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, five Sumatran and five Bornean, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)” should have read “We also sequenced the genomes of 10 additional unrelated wild-caught orang-utans, four Sumatran, five Bornean and one Tapanuli, using a short read sequencing platform (297 Gb of data in total; Supplementary Information section 4)”. In addition, the sentence “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, and five Sumatran) (Supplementary Information section 4)” should have read “We then called single nucleotide polymorphisms (SNPs) from the alignment of all short read data from 10 individuals (five Bornean, including the 20-fold coverage mentioned above, four Sumatran and one Tapanuli) (Supplementary Information section 4).

UR - http://www.scopus.com/inward/record.url?scp=85135849734&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85135849734&partnerID=8YFLogxK

U2 - 10.1038/s41586-022-04799-7

DO - 10.1038/s41586-022-04799-7

M3 - Comment/debate

C2 - 35962045

SN - 0028-0836

VL - 608

SP - E36

JO - Nature

JF - Nature

IS - 7924

ER -

Author Correction: Comparative and demographic analysis of orang-utan genomes (Nature, (2011), 469, 7331, (529-533), 10.1038/nature09687)

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