TY - JOUR
T1 - ClinGen recuration of hearing loss-associated genes demonstrates significant changes in gene-disease validity over time
AU - ClinGen Hearing Loss Clinical Domain Working Group
AU - Tshering, Kezang C.
AU - DiStefano, Marina T.
AU - Oza, Andrea M.
AU - Ajuyah, Pamela
AU - Webb, Ryan
AU - Edoh, Enyonam
AU - Broeren, Ellie
AU - Ratliff, Julie
AU - Gitau, Vanessa
AU - Paris, Kelley
AU - Aburyyan, Amal
AU - Alexander, John
AU - Albano, Victoria
AU - Bai, Donglin
AU - Booth, Kevin T.A.
AU - Buonfiglio, Paula I.
AU - Charfeddine, Cherine
AU - Dalamón, Viviana
AU - Castillo, Ignacio del
AU - Moreno-Pelayo, Miguel Angel
AU - Duzkale, Hatice
AU - Dorshorst, Ben
AU - Faridi, Rabia
AU - Kenna, Margaret
AU - Lewis, Morag A.
AU - Luo, Minjie
AU - Lu, Yu
AU - Mkaouar, Rahma
AU - Matsunaga, Tatsuo
AU - Nara, Kiyomitsu
AU - Pandya, Arti
AU - Redfield, Shelby
AU - Roux, Isabelle
AU - Schimmenti, Lisa A.
AU - Schrauwen, Isabelle
AU - Shaaban, Sherin
AU - Shen, Jun
AU - Vona, Barbara
AU - Smith, Richard J.
AU - Rehm, Heidi L.
AU - Azaiez, Hela
AU - Abou Tayoun, Ahmad N.
AU - Amr, Sami S.
N1 - Publisher Copyright: © 2025 American College of Medical Genetics and Genomics
PY - 2025/5
Y1 - 2025/5
N2 - Purpose: The Clinical Genome Resource (ClinGen) Hearing Loss Gene Curation Expert Panel was assembled in 2016 and has since curated 174 gene-disease relationships (GDRs) using ClinGen's semiquantitative framework. ClinGen mandates the timely recuration of all GDRs classified as Disputed, Limited, Moderate, and Strong every 2 to 3 years. Methods: Thirty-five GDRs met the criteria for recuration within 2 years of original curation. Previous evidence was reevaluated using the latest curation guidelines, and a comprehensive literature review was performed to obtain new evidence. Recurations were approved by the Gene Curation Expert Panel and published on the ClinGen website (www.clinicalgenome.org). Results: Eight of 35 GDRs (22%) changed their classification. Two Moderate and 5 Strong GDRs were upgraded to Definitive because of new case evidence. One Strong was subsumed under another Definitive GDR after evaluation of the lumping/splitting of disease entities. Twenty-seven of 35 patients remained unchanged, with little to no new evidence reported. Conclusion: Genes classified as Moderate and Strong were likely to build evidence and change their classification over time, whereas Limited were unlikely to gain evidence. These findings highlight the critical role of recuration in ensuring that genetic tests and research studies incorporate the most recent evidence into their efforts.
AB - Purpose: The Clinical Genome Resource (ClinGen) Hearing Loss Gene Curation Expert Panel was assembled in 2016 and has since curated 174 gene-disease relationships (GDRs) using ClinGen's semiquantitative framework. ClinGen mandates the timely recuration of all GDRs classified as Disputed, Limited, Moderate, and Strong every 2 to 3 years. Methods: Thirty-five GDRs met the criteria for recuration within 2 years of original curation. Previous evidence was reevaluated using the latest curation guidelines, and a comprehensive literature review was performed to obtain new evidence. Recurations were approved by the Gene Curation Expert Panel and published on the ClinGen website (www.clinicalgenome.org). Results: Eight of 35 GDRs (22%) changed their classification. Two Moderate and 5 Strong GDRs were upgraded to Definitive because of new case evidence. One Strong was subsumed under another Definitive GDR after evaluation of the lumping/splitting of disease entities. Twenty-seven of 35 patients remained unchanged, with little to no new evidence reported. Conclusion: Genes classified as Moderate and Strong were likely to build evidence and change their classification over time, whereas Limited were unlikely to gain evidence. These findings highlight the critical role of recuration in ensuring that genetic tests and research studies incorporate the most recent evidence into their efforts.
KW - ClinGen
KW - Deafness
KW - Gene curation
KW - Genetic diagnosis
KW - Hearing loss
UR - https://www.scopus.com/pages/publications/105000262009
UR - https://www.scopus.com/pages/publications/105000262009#tab=citedBy
U2 - 10.1016/j.gim.2025.101392
DO - 10.1016/j.gim.2025.101392
M3 - Article
C2 - 39987489
SN - 1098-3600
VL - 27
JO - Genetics in Medicine
JF - Genetics in Medicine
IS - 5
M1 - 101392
ER -