Phylogeography of the pallid kangaroo mouse, Microdipodops pallidus: A sand-obligate endemic of the Great Basin, western North America

John C. Hafner, Nathan S. Upham, Emily Reddington, Candice W. Torres

Research output: Contribution to journalArticlepeer-review

18 Scopus citations


Aim: Kangaroo mice, genus Microdipodops Merriam, are endemic to the Great Basin and include two species: M. pallidus Merriam and M. megacephalus Merriam. The pallid kangaroo mouse, M. pallidus, is a sand-obligate desert rodent. Our principal intent is to identify its current geographical distribution and to formulate a phylogeographical hypothesis for this taxon. In addition, we test for orientation patterns in haplotype sharing for evidence of past episodes of movement and gene flow. Location: The Great Basin Desert region of western North America, especially the sandy habitats of the Lahontan Trough and those in south-central Nevada. Methods: Mitochondrial DNA sequence data from portions of three genes (16S ribosomal RNA, cytochrome b, and transfer RNA for glutamic acid) were obtained from 98 individuals of M. pallidus representing 27 general localities sampled throughout its geographical range. Molecular sequence data were analysed using neighbour-joining, maximum-parsimony, maximum-likelihood and Bayesian methods of phylogenetic inference. Directional analysis of phylogeographical patterns, a novel method, was used to examine angular measurements of haplotype sharing between pairs of localities to detect and quantify historical events pertaining to movement patterns and gene flow. Results: Collecting activities showed that M. pallidus is a rather rare rodent (mean trapping success was 2.88%), and its distribution has changed little from that determined three-quarters of a century ago. Two principal phylogroups, distributed as eastern and western moieties, are evident from the phylogenetic analyses (mean sequence divergence for cytochrome b is c. 8%). The western clade shows little phylogenetic structure and seems to represent a large polytomy. In the eastern clade, however, three subgroups are recognized. Nine of the 42 unique composite haplotypes are present at two or more localities and are used for the orientation analyses. Axial data from haplotype sharing between pairwise localities show significant, non-random angular patterns: a north-west to south-east orientation in the western clade, and a north-east to south-west directional pattern in the eastern clade. Main conclusions: The geographical range of M. pallidus seems to be remarkably stable in historical times and does not show a northward (or elevationally upward) movement trend, as has been reported for some other kinds of organism in response to global climate change. The eastern and western clades are likely to represent morphologically cryptic species. Estimated times of divergence of the principal clades of M. pallidus (4.38 Ma) and between M. pallidus and M. megacephalus (8.1 Ma; data from a related study) indicate that kangaroo mice diverged much earlier than thought previously. The phylogeographical patterns described here may serve as a model for other sand-obligate members of the Great Basin Desert biota.

Original languageEnglish (US)
Pages (from-to)2102-2118
Number of pages17
JournalJournal of Biogeography
Issue number11
StatePublished - Nov 2008
Externally publishedYes


  • Conservation biogeography
  • Cryptic species
  • Directional analysis
  • Evolutionarily significant units
  • Great Basin
  • Historical biogeography
  • Microdipodops pallidus
  • Mitochondrial DNA
  • Pallid kangaroo mouse
  • Phylogeography

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Ecology


Dive into the research topics of 'Phylogeography of the pallid kangaroo mouse, Microdipodops pallidus: A sand-obligate endemic of the Great Basin, western North America'. Together they form a unique fingerprint.

Cite this