TY - JOUR
T1 - What makes a megaplasmid?
AU - Hall, James P.J.
AU - Botelho, João
AU - Cazares, Adrian
AU - Baltrus, David A.
N1 - Funding Information: A.C. has been supported by the EMBL-EBI/Wellcome Trust Sanger Institute Join Post-Doctoral Fellowship Program (ESPOD). J.B.J.H. is funded through the Max Planck Society (via a fellowship to Hinrich Schulenburg, Max-Planck Institute for Evolutionary Biology, Ploen, Germany). Acknowledgements Publisher Copyright: © 2021 The Authors.
PY - 2022
Y1 - 2022
N2 - Naturally occurring plasmids come in different sizes. The smallest are less than a kilobase of DNA, while the largest can be over three orders of magnitude larger. Historically, research has tended to focus on smaller plasmids that are usually easier to isolate, manipulate and sequence, but with improved genome assemblies made possible by long-read sequencing, there is increased appreciation that very large plasmids - known as megaplasmids - are widespread, diverse, complex, and often encode key traits in the biology of their host microorganisms. Why are megaplasmids so big? What other features come with large plasmid size that could affect bacterial ecology and evolution? Are megaplasmids 'just' big plasmids, or do they have distinct characteristics? In this perspective, we reflect on the distribution, diversity, biology, and gene content of megaplasmids, providing an overview to these large, yet often overlooked, mobile genetic elements. This article is part of the theme issue 'The secret lives of microbial mobile genetic elements'.
AB - Naturally occurring plasmids come in different sizes. The smallest are less than a kilobase of DNA, while the largest can be over three orders of magnitude larger. Historically, research has tended to focus on smaller plasmids that are usually easier to isolate, manipulate and sequence, but with improved genome assemblies made possible by long-read sequencing, there is increased appreciation that very large plasmids - known as megaplasmids - are widespread, diverse, complex, and often encode key traits in the biology of their host microorganisms. Why are megaplasmids so big? What other features come with large plasmid size that could affect bacterial ecology and evolution? Are megaplasmids 'just' big plasmids, or do they have distinct characteristics? In this perspective, we reflect on the distribution, diversity, biology, and gene content of megaplasmids, providing an overview to these large, yet often overlooked, mobile genetic elements. This article is part of the theme issue 'The secret lives of microbial mobile genetic elements'.
KW - genome evolution
KW - horizontal gene transfer
KW - megaplasmid
KW - mobile genetic element
KW - pangenome
KW - plasmid
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U2 - 10.1098/rstb.2020.0472
DO - 10.1098/rstb.2020.0472
M3 - Review article
C2 - 34839707
SN - 0962-8436
VL - 377
JO - Philosophical Transactions of the Royal Society B: Biological Sciences
JF - Philosophical Transactions of the Royal Society B: Biological Sciences
IS - 1842
M1 - 20200472
ER -